PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04886.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 799aa    MW: 89198.1 Da    PI: 6.5081
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04886.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.35e-12127208199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+k+lt sd++++g +++p++ ae+   +      l+++          l  r++++r++lt+GW+ Fv+a++L +gD+v+F   +
  Sme2.5_04886.1_g00002.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVFPP------LVITG--------SL-SRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 195
                              89999999999999999999999998644......45444........33.3899999*************************..8 PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                              +++ +l+++++r+
  Sme2.5_04886.1_g00002.1 196 NEKNQLLLGIRRA 208
                              899999****997 PP

2Auxin_resp115.93.5e-38233316183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k
  Sme2.5_04886.1_g00002.1 233 AAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSIK 316
                              79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.19E-32111236IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-23121222IPR015300DNA-binding pseudobarrel domain
CDDcd100174.55E-13126207No hitNo description
PfamPF023624.8E-10127208IPR003340B3 DNA binding domain
SMARTSM010192.3E-10127209IPR003340B3 DNA binding domain
PROSITE profilePS508638.6169209IPR003340B3 DNA binding domain
PfamPF065071.1E-33233316IPR010525Auxin response factor
SuperFamilySSF542772.75E-7668746No hitNo description
PfamPF023091.5E-7669758IPR033389AUX/IAA domain
PROSITE profilePS5174525.228672756IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MKLSTSGMDQ QAHEEESKCL NSELWHACAG PLVCLPTIGS RVVYFPQGHS EQVAATTNKE  60
VDAHMPNYPN LPPQLICQLQ NVTMHADVET DEVYAQMTLQ PLTPQEQKDT YLPVELGIPS  120
RQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLVITG SLSRGQPKRH LLTTGWSVFV  180
SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN  240
SCFTVFFNPR ASPSEFVIPL SKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIG  300
DLDPVRWANS HWRSIKYLQF QNTPPKIFHK NDGVLASKPM VLLLAKIVDF VAKLGIDLSD  360
GRDPPIPFFS MCCPFHCVAT LTGERQPRVS LWEIEPLTTF PMYPSLFPLR LKRPWYPGTS  420
SFQENNTEAI NAMSLLRGES GEQGPHLMNL QSFGGMLPWM QQRVDPTVLQ NDLNQQYQAM  480
LASGLQNFGS RDLMKQQLMQ FQQPVQYVQH ASSHNPLMQQ QQHQQEAMQQ AIHQHMLPAQ  540
TQDNLQRQQL QHSVMMEQQP MQKSWMPKFG HSQLNTGSNS SSLSGYGKDT SNSQETCNLD  600
AQNQTLFGAN VDSSGLLLPT TVSNVATTSI DADMSSMPLG TSGFQDSLYG YVQDSSDLLH  660
NVGQVDPQTG TRTFVKVYKS GSVGRSLDIT RFNSYHELRQ ELGQMFGIEG FLEAPQRSGW  720
QLVFVDREND VLLLGDDPWE AFVNNVWCIK ILSPEDVQKL GKEEVESLNH GALERINSNN  780
SADGRDFMSG LPSIGSLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1292031651367Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5609790.0HM560979.1 Solanum lycopersicum auxin response factor 8-1 (ARF8-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305917.20.0hypothetical protein POPTR_0004s07640g
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA3F7710.0A3F771_IPONI; Auxin response factor
STRINGGLYMA11G31940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38572339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8